• Challenges and opportunities beyond structured data in analysis of electronic health records 

      Tayefi, Maryam; Ngo, Phuong; Chomutare, Taridzo; Dalianis, Hercules; Salvi, Elisa; Budrionis, Andrius; Godtliebsen, Fred (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-14)
      Electronic health records (EHR) contain a lot of valuable information about individual patients and the whole population. Besides structured data, unstructured data in EHRs can provide extra, valuable information but the analytics processes are complex, time-consuming, and often require excessive manual effort. Among unstructured data, clinical text and images are the two most popular and important ...
    • De-identifying Swedish EHR text using public resources in the general domain 

      Chomutare, Taridzo; Yigzaw, Kassaye Yitbarek; Budrionis, Andrius; Makhlysheva, Alexandra; Godtliebsen, Fred; Dalianis, Hercules (Journal article; Tidsskriftartikkel; Peer reviewed, 2020)
      Sensitive data is normally required to develop rule-based or train machine learning-based models for de-identifying electronic health record (EHR) clinical notes; and this presents important problems for patient privacy. In this study, we add non-sensitive public datasets to EHR training data; (i) scientific medical text and (ii) Wikipedia word vectors. The data, all in Swedish, is used to train a ...
    • Features of Mobile Diabetes Applications: Review of the Literature and Analysis of Current Applications Compared Against Evidence-Based Guidelines 

      Chomutare, Taridzo; Fernandez-Luque, Luis; Årsand, Eirik; Hartvigsen, Gunnar (Journal article; Tidsskriftartikkel; Peer reviewed, 2011)
      Background: Interest in mobile health (mHealth) applications for self-management of diabetes is growing. In July 2009, we found 60 diabetes applications on iTunes for iPhone; by February 2011 the number had increased by more than 400% to 260. Other mobile platforms reflect a similar trend. Despite the growth, research on both the design and the use of diabetes mHealth applications is scarce. ...
    • The Influence of NegEx on ICD-10 Code Prediction in Swedish: How is the Performance of BERT and SVM Models Affected by Negations? 

      Budrionis, Andrius; Chomutare, Taridzo; Olsen Svenning, Therese; Dalianis, Hercules (Journal article; Tidsskriftartikkel, 2022-08-22)
      Clinical text contains many negated concepts since the physician excludes irrelevant symptoms when reasoning and concluding about the diagnosis. This study investigates the machine interpretation of negated symptoms and diagnoses using a rule-based negation detector and its influence on downstream text classification task. The study focuses on the effect of negated concepts and NegEx preprocessing ...
    • Privacy-preserving audit and feedback on the antibiotic prescribing of General Practitioners 

      Yigzaw, Kassaye Yitbarek; Chomutare, Taridzo; Wynn, Rolf; Berntsen, Gro Karine Rosvold; Bellika, Johan Gustav (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-07-13)
      Background: Antibiotic resistance is a worldwide public health problem that is accelerated by the misuse and overuse of antibiotics. Studies have shown that audits and feedback enable clinicians to compare their personal clinical performance with that of their peers and are effective in reducing the inappropriate prescribing of antibiotics. However, privacy concerns make audits and feedback hard ...
    • Risk-Averse Food Recommendation Using Bayesian Feedforward Neural Networks for Patients with Type 1 Diabetes Doing Physical Activities 

      Ngo, Phuong; Tejedor Hernandez, Miguel Angel; Tayefi, Maryam; Chomutare, Taridzo; Godtliebsen, Fred (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-12)
      <p><i>Background.</i> Since physical activity has a high impact on patients with type 1 diabetes and the risk of hypoglycemia (low blood glucose levels) is significantly higher during and after physical activities, an automatic method to provide a personalized recommendation is needed to improve the blood glucose management and harness the benefits of physical activities. This paper aims to reduce ...